Install mencoder if you don't have it sudo apt-get install mencoder
mencoder -ovc copy -oac copy 1.avi 2.avi -o MergedVideo.avi
-ovc copy - keep original video type, don't encode
-oac copy - keep original audio type, don't encode
-oac copy - keep original audio type, don't encode
Update: the above works sometimes, but just apt-get transcode-utils and run the avimerge utility.
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